Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_3256KEGG: aav:Aave_1783 carbohydrate-binding family V/XII. (305 aa)    
Predicted Functional Partners:
Daci_3255
PFAM: Prophage tail length tape measure; KEGG: aav:Aave_1782 prophage tail length tape measure.
 
   0.935
Daci_3257
KEGG: aav:Aave_1784 hypothetical protein.
   
 
 0.824
Daci_1331
Hypothetical protein; KEGG: aav:Aave_1628 prophage tail length tape measure.
 
 
 
 0.686
Daci_4676
Hypothetical protein; KEGG: aav:Aave_1782 prophage tail length tape measure.
 
 
 
 0.654
Daci_1632
TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: bbr:BB1693 portal protein.
 
 
 0.544
Daci_1637
TIGRFAM: phage head-tail adaptor; PFAM: putative head-tail adaptor protein; KEGG: sit:TM1040_1063 hypothetical protein.
  
 
 0.533
Daci_1634
KEGG: bbr:BB1695 major head protein.
 
 
 0.519
Daci_0265
KEGG: xft:PD0997 hypothetical protein.
  
     0.476
Daci_1645
PFAM: conserved hypothetical protein; KEGG: nwi:Nwi_1179 hypothetical protein.
 
 
   0.473
Daci_4082
PFAM: conserved hypothetical protein; KEGG: nwi:Nwi_1179 hypothetical protein.
 
 
   0.469
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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