Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_3270TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: pen:PSEEN3225 TonB-dependent siderophore receptor FpvA. (831 aa)    
Predicted Functional Partners:
Daci_2715
PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; FAD-binding 8 domain protein; Ferric reductase domain protein transmembrane component domain; KEGG: rme:Rmet_3017 ferric reductase-like transmembrane component-like.
   
    0.831
Daci_3269
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: neu:NE1098 putative transmembrane sensor.
 
 
 0.824
Daci_3272
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: mms:mma_3484 Fe2+-dicitrate sensor, membrane component.
 
 
 0.812
Daci_3275
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: mms:mma_3492 Fe2+-dicitrate sensor, membrane component.
 
 
 0.747
Daci_3326
TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: FecR protein; sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: ppf:Pput_0896 anti-FecI sigma factor, FecR.
 
 
 0.718
Daci_3268
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: mms:mma_3497 RNA polymerase sigma-70 factor, ECF subfamily.
 
  
 0.708
Daci_0220
TIGRFAM: urea ABC transporter, urea binding protein; KEGG: mpt:Mpe_A3587 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein.
   
  
 0.706
Daci_3638
KEGG: vei:Veis_4902 ABC branched chain amino acid family transporter, periplasmic ligand binding protein.
   
  
 0.706
Daci_3271
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: mms:mma_3485 RNA polymerase sigma-70 factor, ECF subfamily.
 
  
 0.704
Daci_2952
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: pau:PA14_46650 putative transmembrane sensor.
 
 
 0.702
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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