Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_3282TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: neu:NE1082 conserved hypothetical protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (410 aa)    
Predicted Functional Partners:
macB-2
ABC transporter related; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 
 
 0.985
macB
ABC transporter related; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 
 
 0.939
Daci_3284
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: mms:mma_3478 outer membrane efflux protein.
 
 
 0.881
Daci_3958
TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: aav:Aave_2818 type I secretion outer membrane protein, TolC family.
 
 0.743
Daci_3279
KEGG: rsh:Rsph17029_3599 hypothetical protein.
 
     0.690
Daci_4572
PFAM: outer membrane efflux protein; KEGG: prw:PsycPRwf_0654 outer membrane efflux protein.
  
 0.684
Daci_2077
PFAM: outer membrane efflux protein; KEGG: mag:amb3061 outer membrane protein.
 
  0.674
Daci_3954
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: vei:Veis_2348 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  
  0.673
Daci_0475
KEGG: mpt:Mpe_A1625 putative outer membrane cation efflux protein.
  
 0.651
Daci_4765
PFAM: outer membrane efflux protein; KEGG: rso:RS00407 putative outer membrane cation efflux system protein.
  
 0.642
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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