Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_3300Intracellular septation protein A; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family. (199 aa)    
Predicted Functional Partners:
Daci_3299
PFAM: BolA family protein; KEGG: ajs:Ajs_1674 BolA family protein; Belongs to the BolA/IbaG family.
  
    0.879
Daci_3298
PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: ajs:Ajs_1673 PpiC-type peptidyl-prolyl cis-trans isomerase.
       0.712
Daci_3301
TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; KEGG: ajs:Ajs_1676 methionine-R-sulfoxide reductase; Belongs to the MsrB Met sulfoxide reductase family.
  
    0.707
selO
Protein of unknown function UPF0061; Catalyzes the transfer of adenosine 5'-monophosphate (AMP) to Ser, Thr or Tyr residues of target proteins (AMPylation). Belongs to the SELO family.
       0.632
secB
Protein-export protein SecB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA.
  
     0.485
Daci_5460
PFAM: import inner membrane translocase subunit Tim44; KEGG: ajs:Ajs_0868 import inner membrane translocase, subunit Tim44.
  
     0.473
Daci_5436
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: aav:Aave_3613 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
  
     0.463
Daci_3070
TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; KEGG: bra:BRADO5066 peptide methionine sulfoxide reductase MsrB.
  
    0.443
thrB
KEGG: ajs:Ajs_3320 homoserine kinase; TIGRFAM: homoserine kinase; PFAM: aminoglycoside phosphotransferase; Belongs to the pseudomonas-type ThrB family.
  
   
 0.428
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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