Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
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textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_3305PFAM: peptidase S15; X-Pro dipeptidyl-peptidase domain protein; KEGG: nfa:nfa43000 putative esterase. (611 aa)    
Predicted Functional Partners:
Daci_2336
PFAM: regulatory protein LuxR; KEGG: rpb:RPB_1819 transcriptional regulator, LuxR family.
  
     0.712
Daci_5313
KEGG: hch:HCH_02671 hypothetical protein.
  
   
 0.696
Daci_5149
PFAM: Ankyrin; KEGG: bur:Bcep18194_B0772 hypothetical protein.
  
     0.683
Daci_0285
KEGG: ppf:Pput_3076 hypothetical protein.
  
     0.671
Daci_2014
KEGG: vei:Veis_4644 porin, gram-negative type.
  
     0.670
Daci_3304
PFAM: Carboxylesterase type B; KEGG: gka:GK3049 thermostable carboxylesterase; Belongs to the type-B carboxylesterase/lipase family.
 
     0.668
Daci_4232
KEGG: rpa:RPA1061 possible polyketide synthesis protein.
  
     0.608
Daci_3681
KEGG: esa:ESA_01915 hypothetical protein.
  
     0.583
Daci_1373
PFAM: beta-lactamase domain protein; KEGG: reu:Reut_B3706 beta-lactamase-like.
  
     0.573
Daci_2077
PFAM: outer membrane efflux protein; KEGG: mag:amb3061 outer membrane protein.
  
     0.538
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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