STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_3307PFAM: Extracellular ligand-binding receptor; KEGG: ajs:Ajs_1679 extracellular ligand-binding receptor. (411 aa)    
Predicted Functional Partners:
Daci_3310
PFAM: inner-membrane translocator; KEGG: ajs:Ajs_1681 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.988
Daci_3309
PFAM: inner-membrane translocator; KEGG: ajs:Ajs_1680 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.987
Daci_3308
KEGG: ajs:Ajs_1679 extracellular ligand-binding receptor.
 
  
 
0.940
Daci_3311
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_1682 ABC transporter related.
 
  
 0.873
Daci_3312
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aav:Aave_2930 ABC transporter-related protein.
 
  
 0.795
Daci_2555
PFAM: inner-membrane translocator; KEGG: vei:Veis_0326 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.734
Daci_2552
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vei:Veis_0330 ABC transporter related.
 
  
 0.680
Daci_2551
PFAM: Extracellular ligand-binding receptor; KEGG: vei:Veis_0332 extracellular ligand-binding receptor.
  
     0.675
Daci_2554
PFAM: inner-membrane translocator; KEGG: vei:Veis_0328 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.655
Daci_2553
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vei:Veis_0329 ABC transporter related.
 
  
 0.604
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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