Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_3311PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_1682 ABC transporter related. (275 aa)    
Predicted Functional Partners:
Daci_3310
PFAM: inner-membrane translocator; KEGG: ajs:Ajs_1681 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.978
Daci_3309
PFAM: inner-membrane translocator; KEGG: ajs:Ajs_1680 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.976
Daci_3308
KEGG: ajs:Ajs_1679 extracellular ligand-binding receptor.
 
    0.923
Daci_3312
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aav:Aave_2930 ABC transporter-related protein.
 
  
0.915
Daci_3307
PFAM: Extracellular ligand-binding receptor; KEGG: ajs:Ajs_1679 extracellular ligand-binding receptor.
 
    0.874
Daci_2554
PFAM: inner-membrane translocator; KEGG: vei:Veis_0328 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.824
Daci_0261
PFAM: inner-membrane translocator; KEGG: reh:H16_B2038 ABC-type transporter, permease component: HAAT family; Belongs to the binding-protein-dependent transport system permease family.
  
 0.822
Daci_2555
PFAM: inner-membrane translocator; KEGG: vei:Veis_0326 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
 0.815
Daci_0260
PFAM: inner-membrane translocator; KEGG: reh:H16_B2037 ABC-type transporter, permease component: HAAT family; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.804
Daci_1070
PFAM: Extracellular ligand-binding receptor; KEGG: vei:Veis_1685 extracellular ligand-binding receptor.
 
    0.802
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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