Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_3322PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; pyridoxamine 5'-phosphate oxidase-related FMN-binding; FAD-binding 9 siderophore-interacting domain protein; KEGG: bxe:Bxe_B0926 putative oxidoreductase. (691 aa)    
Predicted Functional Partners:
Daci_3323
PFAM: Glutathione S-transferase domain; KEGG: rle:RL1425 putative glutathione S-transferase.
 
   
 0.887
Daci_5658
PFAM: protein of unknown function DUF1348; KEGG: bam:Bamb_5951 protein of unknown function DUF1348.
 
     0.647
Daci_3324
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bxe:Bxe_B0927 transcriptional regulator, LysR family.
 
     0.552
Daci_0687
PFAM: ferredoxin; cytochrome P450; Oxidoreductase FAD-binding domain protein; KEGG: reu:Reut_B5278 ferredoxin:cytochrome P450:oxidoreductase FAD/NAD(P)-binding:oxidoreductase FAD-binding region.
     
 0.440
Daci_5558
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: ajs:Ajs_0741 glutamate synthase (ferredoxin).
     
 0.435
Daci_1079
PFAM: globin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pmy:Pmen_3580 globin; Belongs to the globin family.
 
   
0.429
Daci_5941
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
     
 0.418
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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