Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_3339PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: aav:Aave_1397 mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein. (388 aa)    
Predicted Functional Partners:
Daci_3341
PFAM: conserved hypothetical protein; KEGG: aav:Aave_1395 uncharacterized protein UPF0065.
 
    0.732
Daci_3340
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: aav:Aave_1396 short-chain dehydrogenase/reductase SDR.
       0.661
Daci_2360
KEGG: ajs:Ajs_2860 tartrate dehydrogenase; TIGRFAM: tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase.
 
     0.577
Daci_3342
PFAM: dihydrodipicolinate synthetase; KEGG: aav:Aave_1393 dihydrodipicolinate synthetase; Belongs to the DapA family.
 
   
 0.560
Daci_2113
KEGG: ajs:Ajs_1120 tartrate dehydrogenase; TIGRFAM: tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase.
 
     0.532
Daci_1546
2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.
  
    0.509
Daci_5051
2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.
  
    0.509
Daci_1796
KEGG: pol:Bpro_0197 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE domain protein.
   
    0.496
Daci_4496
2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.
   
    0.496
Daci_3338
TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: dar:Daro_1826 phosphonate-binding periplasmic protein.
       0.466
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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