STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_3354PFAM: helix-turn-helix Fis-type; KEGG: mpt:Mpe_A0340 transcriptional activator of acetoin/glycerol metabolism-like protein. (392 aa)    
Predicted Functional Partners:
Daci_4585
KEGG: pol:Bpro_1459 dihydroxyacetone kinase, subunit L; TIGRFAM: dihydroxyacetone kinase, L subunit; PFAM: Dak kinase; Dak phosphatase.
   
 
 0.572
Daci_3353
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bbr:BB0832 probable TonB-dependent receptor.
       0.540
Daci_3352
TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: Pyrrolo-quinoline quinone; KEGG: pol:Bpro_5302 pyrrolo-quinoline quinone.
 
     0.509
Daci_2821
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; KEGG: pau:PA14_10980 hypothetical protein.
  
     0.432
Daci_2530
Putative sigma54 specific transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: bch:Bcen2424_5529 sigma54 specific transcriptional regulator, fis family.
 
   
 0.415
Daci_0539
PFAM: YiaAB two helix domain protein; KEGG: aav:Aave_4490 YiaAB two helix domain protein.
  
     0.409
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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