Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_3361PFAM: thioesterase superfamily protein; KEGG: vei:Veis_2354 uncharacterized domain 1. (148 aa)    
Predicted Functional Partners:
Daci_3362
PFAM: Alcohol dehydrogenase zinc-binding domain protein; KEGG: aav:Aave_2871 alcohol dehydrogenase, zinc-binding domain protein.
 
    0.627
Daci_3360
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ajs:Ajs_1695 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
    0.618
Daci_5992
PFAM: thioesterase superfamily protein; KEGG: bov:BOV_A0326 hypothetical protein.
 
     0.562
Daci_2844
PFAM: thioesterase superfamily protein; KEGG: mms:mma_1704 hypothetical protein.
  
     0.497
Daci_6032
KEGG: ajs:Ajs_4108 hypothetical protein.
  
     0.477
Daci_2382
KEGG: aav:Aave_2154 putative transporter signal peptide protein.
  
     0.431
Daci_2394
PFAM: 2-nitropropane dioxygenase NPD; KEGG: ajs:Ajs_2807 2-nitropropane dioxygenase, NPD.
 
   
 0.417
Daci_0829
PFAM: branched-chain amino acid transport; KEGG: ajs:Ajs_4055 branched-chain amino acid transport.
  
     0.413
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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