STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_3364PFAM: protein of unknown function DUF1566; KEGG: ajs:Ajs_1701 protein of unknown function DUF1566. (240 aa)    
Predicted Functional Partners:
Daci_0539
PFAM: YiaAB two helix domain protein; KEGG: aav:Aave_4490 YiaAB two helix domain protein.
  
     0.715
Daci_1304
KEGG: aav:Aave_4155 general secretion pathway protein J.
 
     0.593
Daci_2821
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; KEGG: pau:PA14_10980 hypothetical protein.
  
     0.554
Daci_3365
TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: aav:Aave_1867 drug resistance transporter, Bcr/CflA subfamily.
       0.538
Daci_3366
PFAM: major facilitator superfamily MFS_1; KEGG: ajs:Ajs_1703 major facilitator superfamily MFS_1.
       0.526
Daci_4495
PFAM: protein of unknown function DUF1501; KEGG: aav:Aave_4705 protein of unknown function DUF1501.
  
     0.489
Daci_1306
PFAM: Fimbrial assembly family protein; KEGG: aav:Aave_4153 fimbrial assembly family protein.
 
     0.473
Daci_4494
PFAM: Protein of unknown function DUF1800; KEGG: aav:Aave_4704 hypothetical protein.
  
     0.466
Daci_4538
PFAM: Tannase and feruloyl esterase; KEGG: bam:Bamb_4911 feruloyl esterase.
  
     0.464
Daci_4138
PFAM: integrase family protein; KEGG: bte:BTH_I1914 integrative genetic element Gsu32, integrase, putative.
  
     0.454
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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