STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_3372PFAM: regulator of chromosome condensation RCC1; KEGG: mxa:MXAN_0889 RCC1 repeat domain protein. (375 aa)    
Predicted Functional Partners:
Daci_5168
KEGG: ajs:Ajs_0969 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I).
    
 
 0.877
Daci_0885
KEGG: aav:Aave_4511 protein tyrosine/serine phosphatase.
   
 
 0.870
Daci_3373
PFAM: multicopper oxidase type 2; multicopper oxidase type 3; KEGG: art:Arth_4421 multicopper oxidase, type 3.
 
   
 0.754
Daci_2297
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: reu:Reut_C6419 peptidase S8 and S53, subtilisin, kexin, sedolisin.
   
 
 0.712
Daci_5814
VRR-NUC domain protein; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family.
   
 
 0.712
Daci_4040
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: ajs:Ajs_2275 sulphate transporter.
  
 
 
 0.668
Daci_2661
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; sulphate transporter; KEGG: rme:Rmet_4635 sulphate transporter.
  
 
 
 0.653
Daci_0865
PFAM: Forkhead-associated protein; KEGG: aav:Aave_4680 FHA domain containing protein.
 
 
  0.637
Daci_0815
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: aav:Aave_0427 sulphate transporter.
    
 
 0.587
Daci_4369
PFAM: Forkhead-associated protein; KEGG: aav:Aave_3060 FHA domain containing protein.
   
  0.568
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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