Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_3374PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; KEGG: ajs:Ajs_1707 RNA binding S1 domain protein. (786 aa)    
Predicted Functional Partners:
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.863
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.859
Daci_0883
PFAM: nuclear protein SET; KEGG: ajs:Ajs_3991 nuclear protein SET.
   
 
 0.834
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
 0.825
Daci_3375
PFAM: Metal-dependent hydrolase HDOD; KEGG: ajs:Ajs_1708 putative signal transduction protein.
       0.703
Daci_1514
KEGG: pfl:PFL_4492 hypothetical protein.
    
 0.514
Daci_2948
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cbe:Cbei_2655 TPR repeat-containing protein.
    
 0.514
Daci_4219
KEGG: sma:SAV3034 hypothetical protein.
    
 0.514
Daci_4841
PFAM: Tetratricopeptide TPR_2 repeat protein.
    
 0.514
Daci_5542
KEGG: aav:Aave_1039 putative transmembrane protein.
    
 0.514
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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