STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_3375PFAM: Metal-dependent hydrolase HDOD; KEGG: ajs:Ajs_1708 putative signal transduction protein. (279 aa)    
Predicted Functional Partners:
Daci_5114
Diguanylate phosphodiesterase; PFAM: EAL domain protein; Metal-dependent hydrolase HDOD; KEGG: aav:Aave_1316 diguanylate phosphodiesterase.
  
     0.721
Daci_5115
Diguanylate phosphodiesterase; PFAM: EAL domain protein; Metal-dependent hydrolase HDOD; KEGG: ajs:Ajs_0990 diguanylate phosphodiesterase.
  
     0.714
Daci_3374
PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; KEGG: ajs:Ajs_1707 RNA binding S1 domain protein.
       0.705
Daci_4783
KEGG: aav:Aave_1852 putative metal dependent phosphohydrolase.
 
   0.703
Daci_0622
PFAM: Metal-dependent hydrolase HDOD; KEGG: ajs:Ajs_3839 putative signal transduction protein.
  
     0.658
Daci_0598
PFAM: GTP-binding signal recognition particle SRP54 G- domain; SMART: AAA ATPase; KEGG: aav:Aave_4414 GTP-binding signal recognition particle SRP54, G-domain.
 
   
 0.519
Daci_0624
TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; KEGG: aav:Aave_4430 flagellar hook-associated protein FlgK.
 
    0.517
Daci_1508
KEGG: mgm:Mmc1_3409 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
 
 
 
 0.514
flgI
Flagellar P-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
 
     0.492
Daci_2904
KEGG: aav:Aave_1802 hypothetical protein.
  
    0.475
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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