STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_3376PFAM: Sel1 domain protein repeat-containing protein; KEGG: ajs:Ajs_1968 Sel1 domain protein repeat-containing protein. (410 aa)    
Predicted Functional Partners:
Daci_3377
PFAM: Peptidoglycan-binding domain 1 protein; KEGG: ajs:Ajs_1969 hypothetical protein.
  
  
 0.780
Daci_2940
KEGG: xau:Xaut_1750 cell morphology protein.
  
 
 0.752
Daci_5233
PFAM: Sel1 domain protein repeat-containing protein; KEGG: hiq:CGSHiGG_00130 Sel1 domain protein repeat-containing protein.
  
     0.576
Daci_3378
KEGG: ajs:Ajs_1970 hypothetical protein.
       0.537
Daci_2941
KEGG: xau:Xaut_1749 hypothetical protein.
  
 
 0.516
Daci_5509
PFAM: Sel1 domain protein repeat-containing protein; KEGG: xau:Xaut_3079 Sel1 domain protein repeat-containing protein.
  
     0.496
Daci_0632
TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: ajs:Ajs_3828 flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
   
 
 0.485
Daci_5758
PFAM: band 7 protein; KEGG: bbt:BBta_5114 hypothetical protein.
  
 
 0.485
Daci_2298
PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: reu:Reut_C6418 AAA ATPase, central region.
   
 0.467
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.