STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_3381Putative signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: pol:Bpro_2542 periplasmic sensor signal transduction histidine kinase. (305 aa)    
Predicted Functional Partners:
Daci_3380
Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pol:Bpro_2543 two component transcriptional regulator, LuxR family.
 
 
 0.910
Daci_0377
Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; Bacterio-opsin activator HTH domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pna:Pnap_4084 two component transcriptional regulator, LuxR family.
 
 
 0.821
Daci_1106
Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; Bacterio-opsin activator HTH domain protein; KEGG: ajs:Ajs_0433 two component transcriptional regulator, LuxR family.
 
 
 0.745
Daci_1809
PFAM: regulatory protein LuxR; response regulator receiver; KEGG: aav:Aave_3862 two component transcriptional regulator, LuxR family.
 
 
 0.694
Daci_3081
Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: mms:mma_0618 positive response regulator for colanic capsule biosynthesis.
 
 
 0.690
Daci_5980
Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: aav:Aave_2497 two component transcriptional regulator, LuxR family.
 
 
 0.669
Daci_1808
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; CHASE3 domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: aav:Aave_3863 multi-sensor signal transduction histidine kinase.
 
     0.667
Daci_3104
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; KEGG: bvi:Bcep1808_3676 response regulator receiver protein.
 
 
 0.662
Daci_3938
Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; KEGG: pae:PA4080 probable response regulator.
 
 
 0.661
Daci_5322
PFAM: regulatory protein LuxR; response regulator receiver; KEGG: aav:Aave_1121 two component transcriptional regulator, LuxR family.
 
 
 0.646
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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