Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Daci_3408KEGG: sec:SC0331 endodeoxyribonuclease. (188 aa)    
Predicted Functional Partners:
Daci_3410
KEGG: hit:NTHI1489 hypothetical protein.
 
     0.806
Daci_3409
Hypothetical protein.
       0.773
Daci_3411
SMART: DNA-directed DNA polymerase; KEGG: xfa:XF0683 phage-related DNA polymerase.
       0.547
Daci_3412
PFAM: CMP/dCMP deaminase zinc-binding; KEGG: sfr:Sfri_3571 CMP/dCMP deaminase, zinc-binding.
       0.547
Daci_2739
Hypothetical protein; KEGG: rme:Rmet_3039 beta-lactamase-like protein.
  
     0.443
Daci_3413
Putative exonuclease RdgC; May be involved in recombination. Belongs to the RdgC family.
       0.428
Daci_3414
PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: pna:Pnap_3939 histone-like nucleoid-structuring protein H-NS.
       0.423
Daci_3407
PFAM: VRR-NUC domain protein; KEGG: cbf:CLI_2427 VRR-NUC domain protein.
       0.405
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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