STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_3415KEGG: xft:PD1725 hypothetical protein. (228 aa)    
Predicted Functional Partners:
Daci_3416
KEGG: xft:PD1724 hypothetical protein.
       0.636
Daci_3414
PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: pna:Pnap_3939 histone-like nucleoid-structuring protein H-NS.
       0.578
Daci_3413
Putative exonuclease RdgC; May be involved in recombination. Belongs to the RdgC family.
       0.570
Daci_3411
SMART: DNA-directed DNA polymerase; KEGG: xfa:XF0683 phage-related DNA polymerase.
       0.490
Daci_3417
Hypothetical protein; KEGG: tcr:506269.40 mucin-associated surface protein (MASP) Pfam: Mucin SerH PROSITE: ALA_RICH GLU_RICH.
       0.450
Daci_3412
PFAM: CMP/dCMP deaminase zinc-binding; KEGG: sfr:Sfri_3571 CMP/dCMP deaminase, zinc-binding.
       0.445
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.