Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_3438KEGG: rsp:RSP_2757 hypothetical protein. (214 aa)    
Predicted Functional Partners:
Daci_2600
Hypothetical protein; KEGG: syf:Synpcc7942_0741 phage tail protein I.
  
 
 0.851
Daci_2634
Hypothetical protein; KEGG: syf:Synpcc7942_0741 phage tail protein I.
  
 
 0.851
Daci_2602
PFAM: GPW/gp25 family protein; KEGG: csa:Csal_1387 gpW/GP25.
  
 
 0.850
Daci_2636
PFAM: GPW/gp25 family protein; KEGG: csa:Csal_1387 gpW/GP25.
  
 
 0.850
Daci_2586
PFAM: late control D family protein; KEGG: pna:Pnap_3315 phage late control D family protein.
  
 
 0.846
Daci_2620
PFAM: late control D family protein; KEGG: pna:Pnap_3315 phage late control D family protein.
  
 
 0.846
Daci_1331
Hypothetical protein; KEGG: aav:Aave_1628 prophage tail length tape measure.
  
 
 0.835
Daci_4676
Hypothetical protein; KEGG: aav:Aave_1782 prophage tail length tape measure.
  
 
 0.835
Daci_3437
PFAM: peptidase S14 ClpP; KEGG: sbm:Shew185_0756 peptidase S14 ClpP; Belongs to the peptidase S14 family.
       0.779
Daci_1297
PFAM: Peptidoglycan-binding LysM; transport-associated; KEGG: ajs:Ajs_0533 peptidoglycan-binding LysM.
  
 
 0.774
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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