Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Daci_3441Hypothetical protein. (213 aa)    
Predicted Functional Partners:
Daci_3439
KEGG: tcx:Tcr_0682 hypothetical protein.
       0.780
Daci_3442
Hypothetical protein.
       0.778
Daci_3440
Hypothetical protein.
       0.773
Daci_3437
PFAM: peptidase S14 ClpP; KEGG: sbm:Shew185_0756 peptidase S14 ClpP; Belongs to the peptidase S14 family.
  
    0.692
Daci_3438
KEGG: rsp:RSP_2757 hypothetical protein.
  
    0.673
Daci_3443
KEGG: son:SO_0679 hypothetical protein.
       0.562
Daci_3436
Hypothetical protein.
       0.475
Daci_4682
KEGG: pna:Pnap_2252 putative RecA/RadA recombinase.
  
    0.457
Daci_3432
TIGRFAM: phage portal protein, lambda family; PFAM: portal protein lambda; KEGG: eba:ebA7269 phage portal protein, lambda family.
  
    0.404
Daci_4684
TIGRFAM: phage portal protein, lambda family; PFAM: portal protein lambda; KEGG: nwi:Nwi_0808 phage portal protein, lambda.
  
    0.404
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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