Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Daci_3448KEGG: aav:Aave_4096 hypothetical protein. (391 aa)    
Predicted Functional Partners:
Daci_3451
KEGG: aav:Aave_4093 hypothetical protein.
       0.799
Daci_3450
KEGG: aav:Aave_4094 hypothetical protein.
       0.781
Daci_3449
KEGG: aav:Aave_4095 hypothetical protein.
       0.778
Daci_3452
KEGG: eba:ebA7267 putative lysozyme.
       0.448
Daci_3453
Hypothetical protein.
       0.443
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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