STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_3451KEGG: aav:Aave_4093 hypothetical protein. (630 aa)    
Predicted Functional Partners:
Daci_3445
KEGG: rso:RSc0874 probable transmembrane protein.
 
     0.799
Daci_3448
KEGG: aav:Aave_4096 hypothetical protein.
       0.797
Daci_3450
KEGG: aav:Aave_4094 hypothetical protein.
       0.783
Daci_3449
KEGG: aav:Aave_4095 hypothetical protein.
       0.779
Daci_3443
KEGG: son:SO_0679 hypothetical protein.
 
     0.752
Daci_2606
KEGG: aav:Aave_2903 prophage LambdaSo, lysozyme, putative.
 
     0.684
Daci_2640
KEGG: aav:Aave_2903 prophage LambdaSo, lysozyme, putative.
 
     0.684
Daci_2588
TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: pna:Pnap_3313 phage tail tape measure protein, TP901 family.
 
     0.489
Daci_2622
TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: pna:Pnap_3313 phage tail tape measure protein, TP901 family.
 
     0.489
Daci_4539
PFAM: porin Gram-negative type; KEGG: pol:Bpro_3117 porin, gram-negative type.
  
     0.472
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.