Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Daci_3476PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: aav:Aave_1150 histone family protein nucleoid-structuring protein H-NS. (97 aa)    
Predicted Functional Partners:
Daci_4869
KEGG: ajs:Ajs_1767 putative transmembrane protein.
  
     0.740
Daci_6032
KEGG: ajs:Ajs_4108 hypothetical protein.
  
     0.725
Daci_5347
KEGG: aav:Aave_1882 hypothetical protein.
  
     0.634
Daci_0832
KEGG: ajs:Ajs_4052 putative lipoprotein transmembrane.
  
    0.603
Daci_4910
KEGG: aav:Aave_2634 putative inner membrane transmembrane protein.
  
     0.594
Daci_0829
PFAM: branched-chain amino acid transport; KEGG: ajs:Ajs_4055 branched-chain amino acid transport.
  
     0.578
Daci_0175
PFAM: thioesterase superfamily protein; KEGG: ajs:Ajs_0131 uncharacterized domain 1.
  
     0.554
Daci_4870
KEGG: ajs:Ajs_1766 putative transmembrane protein.
  
     0.553
Daci_2423
KEGG: aav:Aave_2200 protein of unknown function DUF339.
  
     0.506
Daci_0427
KEGG: pna:Pnap_0262 hypothetical protein.
  
     0.491
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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