STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_3479PFAM: regulatory protein AsnC/Lrp family; KEGG: vei:Veis_0270 putative transcriptional regulator, AsnC family. (159 aa)    
Predicted Functional Partners:
Daci_0841
PFAM: regulatory protein AsnC/Lrp family; KEGG: ajs:Ajs_4009 putative transcriptional regulator, AsnC family.
  
     0.769
Daci_2497
PFAM: regulatory protein AsnC/Lrp family; KEGG: aav:Aave_2309 transcriptional regulator, AsnC family.
  
     0.768
Daci_2839
PFAM: regulatory protein AsnC/Lrp family; KEGG: mlo:mll7935 transcriptional regulator.
  
     0.765
Daci_5900
PFAM: regulatory protein AsnC/Lrp family; KEGG: aav:Aave_4037 transcriptional regulator, AsnC family.
  
     0.726
Daci_5941
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
     
 0.514
Daci_5558
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: ajs:Ajs_0741 glutamate synthase (ferredoxin).
     
 0.492
Daci_3480
PFAM: peptidase S45 penicillin amidase; KEGG: aav:Aave_1140 peptidase S45, penicillin amidase.
       0.470
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.