STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_3480PFAM: peptidase S45 penicillin amidase; KEGG: aav:Aave_1140 peptidase S45, penicillin amidase. (816 aa)    
Predicted Functional Partners:
Daci_4753
TIGRFAM: non-ribosomal peptide synthase; amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; phosphopantetheine-binding; KEGG: bbt:BBta_6813 arthrofactin synthetase/syringopeptin synthetase C-related non-ribosomal peptide synthetase.
 
  
 0.690
Daci_4760
PFAM: MbtH domain protein; KEGG: aav:Aave_3736 MbtH domain protein.
 
    0.637
Daci_4746
KEGG: aav:Aave_3724 cyclic peptide transporter; TIGRFAM: cyclic peptide transporter; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.622
Daci_4749
KEGG: nmu:Nmul_A1825 L-lysine 6-monooxygenase (NADPH).
 
  
 0.588
Daci_2133
KEGG: nca:Noca_4310 hypothetical protein.
  
     0.561
Daci_4757
PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: aav:Aave_3734 taurine catabolism dioxygenase TauD/TfdA.
 
     0.560
Daci_1886
PFAM: alpha/beta hydrolase fold; KEGG: rme:Rmet_4220 alpha/beta hydrolase fold.
      
 0.530
Daci_4366
KEGG: aav:Aave_3065 hypothetical protein.
      
 0.530
Daci_4759
PFAM: Thioesterase; KEGG: nmu:Nmul_A1834 thioesterase.
 
  
 0.525
Daci_4756
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; KEGG: aav:Aave_3733 amino acid adenylation domain.
 
  
 0.499
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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