Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_3498SMART: protein phosphatase 2C domain protein; KEGG: ajs:Ajs_1827 protein phosphatase 2C domain protein. (256 aa)    
Predicted Functional Partners:
Daci_2030
PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: ajs:Ajs_0925 protein kinase.
 
 
 0.855
Daci_3838
PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: aav:Aave_1466 serine/threonine protein kinase.
 
 
 0.844
Daci_4365
PFAM: protein kinase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; tyrosine protein kinase; serine/threonine protein kinase; KEGG: aav:Aave_3066 serine/threonine protein kinase.
 
 
 0.824
Daci_0865
PFAM: Forkhead-associated protein; KEGG: aav:Aave_4680 FHA domain containing protein.
 
 
 0.763
Daci_3978
TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: biotin/lipoyl attachment domain-containing protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: aav:Aave_2464 dihydrolipoamide dehydrogenase.
  
 0.752
Daci_2385
PFAM: protein of unknown function DUF58; KEGG: ajs:Ajs_2815 protein of unknown function DUF58.
 
     0.643
Daci_2384
PFAM: transglutaminase domain protein; KEGG: ajs:Ajs_2816 transglutaminase domain protein.
 
   
 0.615
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
   0.611
Daci_3499
SMART: helicase c2; DEAD-like helicases; KEGG: pol:Bpro_2617 helicase C2.
   
 
 0.610
Daci_3845
TIGRFAM: type IV / VI secretion system protein, DotU family; type VI secretion system OmpA/MotB family protein; PFAM: OmpA/MotB domain protein; KEGG: aav:Aave_1472 OmpA/MotB domain protein.
 
  
 0.610
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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