Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Daci_3511Citrate (pro-3S)-lyase; PFAM: HpcH/HpaI aldolase; KEGG: vei:Veis_3048 citryl-CoA lyase; Belongs to the HpcH/HpaI aldolase family. (292 aa)    
Predicted Functional Partners:
Daci_2431
PFAM: HpcH/HpaI aldolase; KEGG: aav:Aave_2208 HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
  
  
  0.951
Daci_0202
PFAM: HpcH/HpaI aldolase; KEGG: ajs:Ajs_0114 HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
  
  
 
0.924
Daci_1767
TIGRFAM: malonate decarboxylase acyl carrier protein; PFAM: malonate decarboxylase delta subunit; KEGG: mpt:Mpe_A2894 delta subunit of malonate decarboxylase.
  
  
 0.843
mdcB
Triphosphoribosyl-dephospho-CoA synthase; Involved in the formation of 2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A, the prosthetic group of the acyl-carrier protein of the malonate decarboxylase; Belongs to the CitG/MdcB family.
 
  
 0.803
Daci_3510
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vei:Veis_3047 transcriptional regulator, LysR family.
 
     0.622
Daci_1760
PFAM: MmgE/PrpD family protein; KEGG: reh:H16_B1436 2-methylcitrate dehydratase.
 
  
 0.609
Daci_1882
PFAM: MmgE/PrpD family protein; KEGG: vei:Veis_3318 MmgE/PrpD family protein.
 
  
 0.604
Daci_0197
KEGG: ajs:Ajs_0119 hypothetical protein.
 
  
 0.593
Daci_0200
PFAM: MmgE/PrpD family protein; KEGG: ajs:Ajs_0116 MmgE/PrpD family protein.
 
  
 0.586
Daci_3753
KEGG: ajs:Ajs_2040 methylmalonyl-CoA mutase, large subunit; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein.
 
  
 0.586
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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