STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_3513PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: vei:Veis_3050 L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family. (387 aa)    
Predicted Functional Partners:
Daci_3514
PFAM: amidohydrolase 2; KEGG: bja:blr2281 putative 2-pyrone-4,6-dicarbaxylate hydrolase.
       0.778
Daci_3512
PFAM: conserved hypothetical protein; KEGG: vei:Veis_3049 uncharacterized protein UPF0065.
  
    0.609
Daci_3515
PFAM: conserved hypothetical protein; KEGG: reu:Reut_B3798 hypothetical protein.
  
    0.587
Daci_3511
Citrate (pro-3S)-lyase; PFAM: HpcH/HpaI aldolase; KEGG: vei:Veis_3048 citryl-CoA lyase; Belongs to the HpcH/HpaI aldolase family.
  
  
 0.508
Daci_3510
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vei:Veis_3047 transcriptional regulator, LysR family.
 
     0.418
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.