Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_3516Hypothetical protein; KEGG: aav:Aave_2829 glucose sorbosone dehydrogenase. (76 aa)    
Predicted Functional Partners:
Daci_3517
PFAM: protein of unknown function DUF28; KEGG: pol:Bpro_2928 protein of unknown function DUF28.
 
     0.614
Daci_5289
KEGG: pna:Pnap_1085 putative transmembrane protein.
  
     0.417
Daci_4500
PFAM: glucose sorbosone dehydrogenase; KEGG: sus:Acid_1883 glucose sorbosone dehydrogenase.
  
     0.413
Daci_3947
PFAM: integrase family protein; KEGG: pna:Pnap_4572 phage integrase; Belongs to the 'phage' integrase family.
  
     0.400
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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