STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_3534PFAM: aminotransferase class I and II; KEGG: ajs:Ajs_1915 aminotransferase, class I and II. (388 aa)    
Predicted Functional Partners:
Daci_3535
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: aav:Aave_3166 transcriptional regulator, LysR family.
       0.739
Daci_3536
PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: aav:Aave_3165 cobalamin (vitamin B12) biosynthesis CbiX protein.
     
 0.720
Daci_3537
PFAM: permease YjgP/YjgQ family protein; KEGG: aav:Aave_3164 permease YjgP/YjgQ family protein.
       0.625
Daci_3538
PFAM: permease YjgP/YjgQ family protein; KEGG: aav:Aave_3163 permease YjgP/YjgQ family protein.
       0.625
Daci_5558
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: ajs:Ajs_0741 glutamate synthase (ferredoxin).
  
  
 0.536
Daci_3533
PFAM: Tannase and feruloyl esterase; KEGG: bra:BRADO4865 putative feruloyl esterase.
       0.532
pepA
Leucyl aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.
   
   0.490
Daci_6041
PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: ppf:Pput_2966 NAD(P)H dehydrogenase (quinone).
   
    0.483
Daci_4721
TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; amino acid-binding ACT domain protein; KEGG: ajs:Ajs_2466 chorismate mutase.
 
  
 0.468
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
 
  
 0.461
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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