STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_3571PFAM: Biopolymer transport protein ExbD/TolR; KEGG: aav:Aave_2565 biopolymer transport protein ExbD/TolR. (141 aa)    
Predicted Functional Partners:
Daci_3572
PFAM: MotA/TolQ/ExbB proton channel; KEGG: ajs:Ajs_2303 MotA/TolQ/ExbB proton channel.
 
 
 0.980
lpxK
Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).
 
    0.874
Daci_1483
TIGRFAM: TonB family protein; KEGG: ajs:Ajs_3655 TonB family protein.
 
 
 0.774
Daci_6006
PFAM: MotA/TolQ/ExbB proton channel; KEGG: ajs:Ajs_3921 MotA/TolQ/ExbB proton channel.
 
 
 0.763
tolQ
Protein TolQ; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 
 0.747
Daci_4623
PFAM: MotA/TolQ/ExbB proton channel; KEGG: ajs:Ajs_2407 MotA/TolQ/ExbB proton channel.
 
 
 0.712
Daci_3569
PFAM: protein of unknown function DUF343; KEGG: ajs:Ajs_2306 protein of unknown function DUF343; Belongs to the UPF0434 family.
       0.683
kdsB
3-deoxy-D-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.
 
     0.664
Daci_5812
TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: ajs:Ajs_2406 TonB family protein.
 
 
 0.651
Daci_4622
TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: aav:Aave_3311 TonB family protein.
 
 
 0.648
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.