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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_3577PFAM: major facilitator superfamily MFS_1; KEGG: pfl:PFL_4098 transporter, putative. (406 aa)    
Predicted Functional Partners:
Daci_3578
PFAM: regulatory protein TetR; KEGG: pfl:PFL_4099 transcriptional regulator, TetR family.
 
     0.740
Daci_5859
KEGG: pau:PA14_60860 transcriptional regulatory protein NfxB.
  
     0.562
Daci_2795
3''-kinase; PFAM: aminoglycoside/hydroxyurea antibiotic resistance kinase; KEGG: mms:mma_1889 streptomycin phosphotransferase.
  
     0.532
Daci_0054
KEGG: ajs:Ajs_0034 cytochrome c, class I.
  
     0.445
Daci_3003
Secreted repeat-domain containing protein; PFAM: Secreted repeat of unknown function; KEGG: ajs:Ajs_2553 secreted repeat of unknown function.
  
     0.420
Daci_1785
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bmn:BMA10247_A0721 hypothetical protein.
  
     0.403
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.