STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_3579KEGG: ajs:Ajs_1632 PEP phosphonomutase. (286 aa)    
Predicted Functional Partners:
Daci_5862
KEGG: ajs:Ajs_1635 2-methylcitrate synthase/citrate synthase II; TIGRFAM: 2-methylcitrate synthase/citrate synthase II; PFAM: Citrate synthase; Belongs to the citrate synthase family.
 
 
 0.892
Daci_4908
Citrate synthase; PFAM: regulatory protein MerR; Citrate synthase; KEGG: bur:Bcep18194_B1148 citrate synthase.
 
 
 0.737
Daci_0799
KEGG: rme:Rmet_5380 hypothetical protein.
 
 
 0.718
Daci_2422
KEGG: ajs:Ajs_2798 citrate synthase I; TIGRFAM: citrate synthase I; PFAM: Citrate synthase; Belongs to the citrate synthase family.
 
 
 0.712
Daci_3586
TIGRFAM: AcnD-accessory protein PrpF; PFAM: protein of unknown function DUF453; KEGG: ppu:PP_2337 hypothetical protein.
 
  
 0.690
Daci_1760
PFAM: MmgE/PrpD family protein; KEGG: reh:H16_B1436 2-methylcitrate dehydratase.
 
  
 0.647
glcB
Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
  
  
 0.644
Daci_1882
PFAM: MmgE/PrpD family protein; KEGG: vei:Veis_3318 MmgE/PrpD family protein.
 
  
 0.641
Daci_3580
PFAM: conserved hypothetical protein; KEGG: bbr:BB4843 hypothetical protein.
       0.639
Daci_0200
PFAM: MmgE/PrpD family protein; KEGG: ajs:Ajs_0116 MmgE/PrpD family protein.
 
  
 0.633
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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