STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_3586TIGRFAM: AcnD-accessory protein PrpF; PFAM: protein of unknown function DUF453; KEGG: ppu:PP_2337 hypothetical protein. (398 aa)    
Predicted Functional Partners:
Daci_3587
TIGRFAM: 2-methylisocitrate dehydratase, Fe/S-dependent; PFAM: aconitate hydratase domain protein; KEGG: ajs:Ajs_1634 2-methylisocitrate dehydratase, Fe/S-dependent.
 
 
 0.996
Daci_5861
TIGRFAM: 2-methylisocitrate dehydratase, Fe/S-dependent; PFAM: aconitate hydratase domain protein; KEGG: ajs:Ajs_1634 2-methylisocitrate dehydratase, Fe/S-dependent.
 
 
 0.983
Daci_2433
TIGRFAM: aconitate hydratase 2; PFAM: aconitate hydratase domain protein; Aconitase B, N-terminal; KEGG: aav:Aave_2210 aconitate hydratase; Belongs to the aconitase/IPM isomerase family.
    
 0.912
Daci_5862
KEGG: ajs:Ajs_1635 2-methylcitrate synthase/citrate synthase II; TIGRFAM: 2-methylcitrate synthase/citrate synthase II; PFAM: Citrate synthase; Belongs to the citrate synthase family.
 
  
 0.703
Daci_3579
KEGG: ajs:Ajs_1632 PEP phosphonomutase.
 
  
 0.690
Daci_3588
PFAM: conserved hypothetical protein; KEGG: rme:Rmet_6149 twin-arginine translocation pathway signal.
       0.625
Daci_1811
PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: aav:Aave_3860 UBA/ThiF-type NAD/FAD binding protein.
     
 0.540
Daci_2441
TIGRFAM: aconitate hydratase 1; PFAM: aconitate hydratase domain protein; KEGG: ajs:Ajs_1145 aconitate hydratase 1.
  
  
 0.528
Daci_4555
PFAM: aconitate hydratase domain protein; KEGG: pol:Bpro_3871 aconitate hydratase-like.
  
  
 0.528
Daci_0794
TIGRFAM: precorrin 3B synthase CobZ; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: ajs:Ajs_4070 precorrin 3B synthase CobZ.
 
    0.497
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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