STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_3595PFAM: NUDIX hydrolase; KEGG: vei:Veis_3823 NUDIX hydrolase. (187 aa)    
Predicted Functional Partners:
Daci_3596
PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: aav:Aave_2473 fumarylacetoacetate (FAA) hydrolase.
       0.522
Daci_5341
PFAM: NUDIX hydrolase; KEGG: ajs:Ajs_3351 NUDIX hydrolase.
 
  
 0.480
Daci_3594
PFAM: CheW domain protein; KEGG: mpt:Mpe_A2970 hypothetical protein.
  
    0.427
Daci_2213
PFAM: NUDIX hydrolase; KEGG: ajs:Ajs_2899 NUDIX hydrolase.
 
   
0.419
Daci_3598
PFAM: protein of unknown function DUF152; KEGG: vei:Veis_3820 protein of unknown function DUF152; Belongs to the multicopper oxidase YfiH/RL5 family.
       0.415
Daci_5462
PFAM: protein of unknown function DUF971; KEGG: aav:Aave_3645 protein of unknown function DUF971.
  
     0.403
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.401
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.