STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_3607Transcriptional regulator, RpiR family; PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: pmy:Pmen_1089 transcriptional regulator, RpiR family. (325 aa)    
Predicted Functional Partners:
Daci_3603
PFAM: peptidase T2 asparaginase 2; KEGG: aav:Aave_1656 peptidase T2, asparaginase 2.
  
    0.814
Daci_3606
SMART: extracellular solute-binding protein family 3; KEGG: azo:azo1331 putative amino acid-binding protein.
       0.773
Daci_3605
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: azo:azo1330 putative amino acid permease.
       0.718
Daci_3604
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbr:BB4446 putative amino acid ABC transporter permease protein.
  
    0.688
Daci_1368
PFAM: sugar isomerase (SIS); KEGG: aav:Aave_1915 transcriptional regulator, RpiR family.
  
     0.645
Daci_5676
Transcriptional regulator, RpiR family; PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: ajs:Ajs_0694 transcriptional regulator, RpiR family.
  
     0.619
Daci_3608
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aav:Aave_2480 ABC transporter-related protein.
       0.432
Daci_0985
PFAM: PfkB domain protein; KEGG: rso:RSc1240 probable transferase kinase protein.
 
   
 0.411
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.