Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_3704PFAM: regulatory protein MarR; KEGG: pna:Pnap_3143 transcriptional regulator, MarR family. (178 aa)    
Predicted Functional Partners:
Daci_3705
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ajs:Ajs_2010 transcriptional regulator, LysR family.
       0.737
Daci_3702
PFAM: Cupin 2 conserved barrel domain protein; KEGG: pna:Pnap_3145 cupin 2, conserved barrel domain protein.
 
     0.626
Daci_1859
PFAM: regulatory protein MarR; KEGG: aav:Aave_3922 transcriptional regulator, MarR family.
  
     0.591
Daci_3703
PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: pna:Pnap_3144 monooxygenase, FAD-binding.
 
    0.557
Daci_3700
TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase domain; KEGG: pna:Pnap_3147 maleylacetoacetate isomerase.
 
     0.544
Daci_3706
PFAM: Patatin; KEGG: aav:Aave_2086 patatin.
       0.537
Daci_3701
PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: pna:Pnap_3146 fumarylacetoacetate (FAA) hydrolase.
       0.470
Daci_5714
PFAM: regulatory protein MarR; KEGG: xau:Xaut_1307 transcriptional regulator, MarR family.
  
     0.458
Daci_5402
PFAM: regulatory protein MarR; transcriptional regulator TrmB; KEGG: aav:Aave_4468 transcriptional regulator, TrmB.
  
     0.422
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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