STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_3714PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: ppr:PBPRB0302 conserved hypothetical protein. (359 aa)    
Predicted Functional Partners:
Daci_1860
PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: mpt:Mpe_A3709 NADH dehydrogenase (quinone).
  
 
 0.926
Daci_3713
KEGG: mxa:MXAN_1292 hypothetical protein.
   
 
 0.814
Daci_0687
PFAM: ferredoxin; cytochrome P450; Oxidoreductase FAD-binding domain protein; KEGG: reu:Reut_B5278 ferredoxin:cytochrome P450:oxidoreductase FAD/NAD(P)-binding:oxidoreductase FAD-binding region.
 
0.741
Daci_0813
TIGRFAM: phenylacetate-CoA oxygenase, PaaJ subunit; PFAM: protein of unknown function DUF59; KEGG: mpt:Mpe_A0990 putative ring oxidation complex protein 3.
 
  
 0.699
Daci_0811
TIGRFAM: phenylacetate-CoA oxygenase, PaaH subunit; PFAM: phenylacetic acid degradation B; KEGG: mpt:Mpe_A0988 hypothetical protein.
 
  
 0.664
Daci_3998
FeS cluster assembly scaffold IscU; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters.
  
 0.664
Daci_4270
PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bte:BTH_II1273 2,4-dienoyl-CoA reductase.
 
 
 0.652
Daci_3715
PFAM: glutamine amidotransferase class-I; KEGG: rso:RSc1158 glutamine amidotransferase.
       0.622
iscS
Cysteine desulfurase IscS; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins.
  
 0.619
Daci_0072
TIGRFAM: benzoyl-CoA oxygenase/reductase, BoxA protein; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: vei:Veis_0734 oxidoreductase FAD/NAD(P)-binding domain protein.
  
 
 0.608
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.