STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_3716PFAM: Antibiotic biosynthesis monooxygenase; KEGG: mms:mma_1686 hypothetical protein. (122 aa)    
Predicted Functional Partners:
Daci_4415
PFAM: NIPSNAP family containing protein; KEGG: bur:Bcep18194_B0447 protein of unknown function DUF1099.
 
     0.631
Daci_3715
PFAM: glutamine amidotransferase class-I; KEGG: rso:RSc1158 glutamine amidotransferase.
       0.542
Daci_3714
PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: ppr:PBPRB0302 conserved hypothetical protein.
       0.445
Daci_3713
KEGG: mxa:MXAN_1292 hypothetical protein.
       0.433
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.