Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_3727Hypothetical protein; KEGG: sdn:Sden_2437 YD repeat. (187 aa)    
Predicted Functional Partners:
Daci_3874
TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; KEGG: aav:Aave_2740 YD repeat protein.
  
     0.726
Daci_4514
YD repeat protein; KEGG: mba:Mbar_A3399 hypothetical protein; TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; SMART: Hedgehog/intein hint domain protein.
 
   
 0.720
Daci_4753
TIGRFAM: non-ribosomal peptide synthase; amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; phosphopantetheine-binding; KEGG: bbt:BBta_6813 arthrofactin synthetase/syringopeptin synthetase C-related non-ribosomal peptide synthetase.
  
  
 0.575
Daci_5569
PFAM: beta-lactamase domain protein; KEGG: vei:Veis_2417 beta-lactamase domain protein.
   
    0.508
Daci_3726
Hypothetical protein; KEGG: sdn:Sden_2437 YD repeat.
 
    
0.447
Daci_0206
Hypothetical protein; KEGG: stm:STM0283 putative inner membrane protein.
  
   0.410
Daci_5514
Hypothetical protein; KEGG: hch:HCH_02780 RTX toxins and related Ca2+-binding protein.
 
  
 0.402
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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