Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Daci_3751PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_2038 AMP-dependent synthetase and ligase. (647 aa)    
Predicted Functional Partners:
Daci_5726
PFAM: biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: reu:Reut_A2451 biotin/lipoyl attachment:carbamoyl-phosphate synthase L chain, ATP-binding:carbamoyl-phosphate synthetase large chain, N-terminal:biotin carboxylase, C-terminal.
    
 0.813
Daci_3166
PFAM: AMP-dependent synthetase and ligase; KEGG: reu:Reut_A3057 AMP-dependent synthetase and ligase.
 
 
 0.769
Daci_1405
PFAM: AMP-dependent synthetase and ligase; KEGG: reh:H16_A2076 long-chain-fatty-acid--CoA ligase.
 
 
0.706
Daci_0696
PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_0104 AMP-dependent synthetase and ligase.
 
 
0.702
Daci_0027
PFAM: AMP-dependent synthetase and ligase; KEGG: rfr:Rfer_4067 AMP-dependent synthetase and ligase.
  
  
 
0.689
Daci_1072
PFAM: AMP-dependent synthetase and ligase; KEGG: vei:Veis_1683 AMP-dependent synthetase and ligase.
 
 
0.689
Daci_1159
PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_0470 AMP-dependent synthetase and ligase.
  
  
 
0.688
Daci_0928
PFAM: AMP-dependent synthetase and ligase; KEGG: rme:Rmet_4454 AMP-dependent synthetase and ligase.
 
 
0.680
Daci_0946
PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_3950 AMP-dependent synthetase and ligase.
  
 
0.645
Daci_1265
PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_0516 AMP-dependent synthetase and ligase.
  
 
0.645
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.