STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_3752Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: ajs:Ajs_2039 transcriptional regulator, GntR family. (211 aa)    
Predicted Functional Partners:
Daci_0231
PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rso:RSc2102 probable transcription regulator protein.
 
  
 0.787
Daci_2815
PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rfr:Rfer_0447 GntR-like.
 
  
 0.772
Daci_4254
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: reh:H16_A0034 transcriptional regulator, GntR-family.
  
     0.770
Daci_3345
PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: ent:Ent638_0131 GntR domain protein.
 
  
 0.724
Daci_6022
PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: aav:Aave_4749 GntR domain protein.
 
  
 0.657
Daci_3753
KEGG: ajs:Ajs_2040 methylmalonyl-CoA mutase, large subunit; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein.
       0.599
Daci_3754
TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein; KEGG: ajs:Ajs_2041 LAO/AO transport system ATPase.
       0.565
Daci_3755
PFAM: carboxyl transferase; KEGG: ajs:Ajs_2042 carboxyl transferase.
       0.448
Daci_3751
PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_2038 AMP-dependent synthetase and ligase.
       0.413
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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