Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_3775PFAM: Ricin B lectin; KEGG: sco:SCO7212 secreted glycosyl hydrolase. (275 aa)    
Predicted Functional Partners:
Daci_3776
PFAM: protein of unknown function DUF218; KEGG: pcr:Pcryo_2372 protein of unknown function DUF218.
       0.762
Daci_5761
PFAM: conserved hypothetical protein; KEGG: pfl:PFL_5821 hypothetical protein.
  
     0.671
Daci_4368
PFAM: protein of unknown function DUF181; KEGG: aav:Aave_3061 protein of unknown function DUF181.
  
     0.625
Daci_3777
KEGG: ajs:Ajs_2044 lactoylglutathione lyase.
  
    0.590
Daci_1726
KEGG: aav:Aave_3790 transposase, IS4 family protein.
  
     0.468
Daci_2047
KEGG: aav:Aave_3790 transposase, IS4 family protein.
  
     0.468
Daci_2524
KEGG: aav:Aave_3790 transposase, IS4 family protein.
  
     0.468
Daci_3094
KEGG: aav:Aave_3790 transposase, IS4 family protein.
  
     0.468
Daci_3622
KEGG: aav:Aave_3790 transposase, IS4 family protein.
  
     0.468
Daci_3631
KEGG: aav:Aave_3790 transposase, IS4 family protein.
  
     0.468
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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