STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_3778KEGG: aav:Aave_0646 UvrD/REP helicase. (689 aa)    
Predicted Functional Partners:
Daci_4163
PFAM: UvrD/REP helicase; KEGG: xau:Xaut_3048 UvrD/REP helicase.
     
  0.900
Daci_5331
PFAM: UvrD/REP helicase; KEGG: aav:Aave_1916 UvrD/REP helicase.
     
  0.900
Daci_3687
PFAM: Propeptide PepSY amd peptidase M4; KEGG: prw:PsycPRwf_1922 propeptide, PepSY amd peptidase M4.
 
   
 0.755
Daci_5214
Hypothetical protein; KEGG: bbt:BBta_6747 putative resolvase (site-specific recombinase).
 
   
 0.741
Daci_5522
KEGG: ajs:Ajs_0761 hypothetical protein.
 
     0.732
Daci_4375
KEGG: ppf:Pput_2741 GCN5-related N-acetyltransferase.
  
     0.730
Daci_0141
KEGG: aav:Aave_0181 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; Helicase superfamily 1 and 2 ATP-binding; SMART: DEAD-like helicases.
  
 
 0.716
Daci_3947
PFAM: integrase family protein; KEGG: pna:Pnap_4572 phage integrase; Belongs to the 'phage' integrase family.
 
   
 0.707
recA
recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
 
 0.705
Daci_3012
KEGG: aav:Aave_3368 hypothetical protein.
  
     0.664
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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