Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Daci_3796KEGG: reu:Reut_B5118 hypothetical protein. (327 aa)    
Predicted Functional Partners:
Daci_3795
PFAM: 2OG-Fe(II) oxygenase; KEGG: rso:RSc2568 probable alkylated DNA repair protein.
 
     0.855
Daci_3794
KEGG: rme:Rmet_3764 hypothetical protein.
 
    
0.819
Daci_2857
KEGG: dge:Dgeo_0531 hypothetical protein.
  
     0.568
Daci_2858
KEGG: ade:Adeh_1212 hypothetical protein.
  
     0.546
Daci_2162
Transcriptional regulator, AraC family; TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: helix-turn-helix- domain containing protein AraC type; methylguanine DNA methyltransferase ribonuclease domain protein; Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: rso:RSc2570 probable ADA regulatory of adaptative response contains: methylated-DNA--protein-cysteine methyltransferaseO-6-methylguanine-DNA transcription regulator.
 
     0.492
Daci_3797
Hypothetical protein.
       0.480
Daci_2870
KEGG: pae:PA3765 hypothetical protein.
 
     0.477
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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