Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_3803Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Two-component sensor kinase domain protein; KEGG: pol:Bpro_1451 histidine kinase. (472 aa)    
Predicted Functional Partners:
Daci_3802
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pol:Bpro_1450 two component transcriptional regulator, winged helix family.
 
 0.994
Daci_2517
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: aav:Aave_3012 two component transcriptional regulator, winged helix family.
 
 0.978
Daci_1508
KEGG: mgm:Mmc1_3409 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
 
 
 0.816
Daci_3804
PFAM: conserved hypothetical protein; KEGG: bbr:BB5009 putative tricarboxylic transport membrane protein.
 
     0.798
Daci_0876
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ajs:Ajs_3999 two component transcriptional regulator, winged helix family.
 
 
 0.787
Daci_1322
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: aav:Aave_4138 two component transcriptional regulator, winged helix family.
 
 
 0.768
Daci_4347
Hypothetical protein; KEGG: rpc:RPC_3208 periplasmic sensor hybrid histidine kinase.
   
 
 0.768
Daci_1873
PFAM: response regulator receiver; KEGG: aav:Aave_2238 response regulator receiver protein.
 
 
 0.756
Daci_0738
PFAM: response regulator receiver; KEGG: aav:Aave_2238 response regulator receiver protein.
 
 
 0.755
Daci_2714
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rme:Rmet_3016 two component transcriptional regulator, winged helix family.
 
 
 0.754
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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