STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_3810KEGG: vei:Veis_1359 hypothetical protein. (150 aa)    
Predicted Functional Partners:
Daci_3811
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vei:Veis_1366 transcriptional regulator, LysR family.
 
     0.699
Daci_2944
KEGG: psp:PSPPH_1082 hypothetical protein.
  
     0.599
Daci_2942
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: mms:mma_2622 hypothetical protein.
  
     0.595
Daci_3731
KEGG: pfl:PFL_4030 hypothetical protein.
  
     0.561
Daci_2940
KEGG: xau:Xaut_1750 cell morphology protein.
  
     0.525
Daci_3809
PFAM: porin Gram-negative type; KEGG: reh:H16_A0625 outer membrane protein (porin).
  
    0.509
Daci_1984
PFAM: Na+/solute symporter; KEGG: reh:H16_B0867 APC transporter, SSS family; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
    0.500
Daci_0914
Protocatechuate 4,5-dioxygenase; PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: pna:Pnap_2733 protocatechuate 4,5-dioxygenase.
 
     0.490
Daci_2941
KEGG: xau:Xaut_1749 hypothetical protein.
  
     0.452
Daci_3884
KEGG: rpb:RPB_3526 hypothetical protein.
  
     0.443
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.