Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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co-expression
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gene neighborhood
gene co-occurrence
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[Homology]
Score
Daci_3832KEGG: rme:Rmet_4756 hypothetical protein. (129 aa)    
Predicted Functional Partners:
Daci_3833
Hypothetical protein.
       0.517
Daci_3831
GAF sensor hybrid histidine kinase; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; CHASE3 domain protein; KEGG: aav:Aave_3996 multi-sensor hybrid histidine kinase.
       0.481
Daci_3828
PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: aav:Aave_3993 response regulator receiver sensor signal transduction histidine kinase.
       0.469
Daci_3829
PFAM: CheB methylesterase; KEGG: ajs:Ajs_0649 CheB methylesterase.
       0.469
Daci_3830
PFAM: MCP methyltransferase CheR-type; KEGG: ajs:Ajs_0648 MCP methyltransferase, CheR-type.
       0.469
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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