Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Daci_3855KEGG: pae:PA2724 hypothetical protein. (186 aa)    
Predicted Functional Partners:
Daci_3854
KEGG: pfl:PFL_5498 putative cytoplasmic protein.
       0.768
Daci_3856
PFAM: virulence protein SciE type; KEGG: aav:Aave_1478 virulence protein, SciE type.
       0.618
Daci_3857
KEGG: aav:Aave_0193 hypothetical protein.
       0.601
Daci_3858
TIGRFAM: type VI secretion system lysozyme-related protein; PFAM: GPW/gp25 family protein; KEGG: aav:Aave_1479 protein of unknown function DUF1316.
       0.585
Daci_3853
KEGG: aav:Aave_1107 hypothetical protein.
       0.556
Daci_3859
TIGRFAM: type VI secretion protein, VC_A0110 family; PFAM: protein of unknown function DUF879; KEGG: aav:Aave_1480 protein of unknown function DUF879.
       0.531
Daci_3851
TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family; PFAM: protein of unknown function DUF877; KEGG: aav:Aave_1477 protein of unknown function DUF877.
       0.418
Daci_3852
KEGG: aav:Aave_1071 hypothetical protein.
       0.418
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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